Pathogens Portal Netherlands

⭐ Featured VEO-linked integrated dataset • Wastewater + Metagenomics + AMR + One Health surveillance

European Sewage Metagenomics Surveillance Resource (Five-city One Health dataset)

Koopmans & Aarestrup + VEO consortium partners

This integrated VEO-linked One Health dataset combines longitudinal sewage surveillance from five European cities with high-resolution metagenomic profiling. It includes microbial community composition, pathogen detection, antimicrobial resistance (AMR) gene abundance, and metagenome-assembled genomes (MAGs), all linked to spatial and temporal metadata. The dataset provides a unique framework for monitoring population-level microbial dynamics and antimicrobial resistance trends using wastewater as a proxy for human and environmental health.

🌊 Wastewater • 🧬 Metagenomics • 🦠 AMR • 📊 Epidemiology

Policy relevance: ECDC preparedness • One Health surveillance • AMR monitoring

📦 ENA sequencing dataset (PRJEB68319) 📊 Figshare dataset (metagenomic sewage resource) 🔧 GitHub database & analysis tools 📄 Associated publication (Oxford Database Journal)

🧠 Key insight: Wastewater metagenomics enables early detection of antimicrobial resistance and pathogen circulation before clinical reporting systems capture signals.